Biologically Inspired Computing - Revision history

74.233.57.111 at 17:18, 18 May 2009

2009-05-18T17:18:24Z

Seth at 23:40, 27 March 2009

2009-03-27T23:40:17Z

Seth at 23:36, 27 March 2009

2009-03-27T23:36:32Z

Seth at 22:53, 27 March 2009

2009-03-27T22:53:20Z

Seth at 22:52, 27 March 2009

2009-03-27T22:52:22Z

Seth at 22:52, 27 March 2009

2009-03-27T22:52:11Z

Seth at 22:04, 27 March 2009

2009-03-27T22:04:10Z

Seth at 21:50, 27 March 2009

2009-03-27T21:50:48Z

Seth at 21:01, 27 March 2009

2009-03-27T21:01:49Z

Seth at 20:10, 27 March 2009

2009-03-27T20:10:39Z

@@ Line 1: / Line 1: @@
 Much of this is from Luis's course (http://informatics.indiana.edu/rocha/i-bic/) (http://life-inspired.blogspot.com/), or led from it.  A good amount of ALife.
 [[H. Lipson and J. B. Pollack (2000), "Automatic design and Manufacture of Robotic Lifeforms"]], Nature 406: 974-978.
@@ Line 9: / Line 10: @@
 [[Sims,K. 1994). “Evolving Virtual Creatures”]]. Proceedings of the 21st annual conference on Computer graphics and interactive techniques, pp. 15 -22
 [[Crutchfield, J.P. and M. Mitchell (1995)."The evolution of emergent computation."]] Proc. National Academy of Sciences, USA, 92: 10742-10746.
-−
-[[D. Peak, J.D. West, S.M. Messinger, and K.A. Mott. (2004) "Evidence for complex, collective dynamics and distributed emergent computation in plants."]], PNAS. 101(4): 918–922
 [[Kauffman, S. (1984). “Emergent Properties In Random Complex Automata”]]. Physica D. 10:145-156.
@@ Line 29: / Line 28: @@
 [[De Sousa, et. al. 2004. An Immune-Evolutionary Algorithm for Multiple Rearrangements of Gene Expression Data|De Sousa, J. S., De C. T. Gomes, L., Bezerra, G. B., De Castro, L. N., and Von Zuben, F. J. 2004. An Immune-Evolutionary Algorithm for Multiple Rearrangements of Gene Expression Data ]]. Genetic Programming and Evolvable Machines 5, 2 (Jun. 2004), 157-179.
 [[M. Dorigo, M. Birattari, T. Stützle, Ant Colony Optimization--Artificial Ants as a Computational Intelligence Technique]], IEEE Computational Intelligence Magazine, 2006
@@ Line 45: / Line 40: @@
 [[Jensen, R. (2006). “Ant Colony Clustering and Feature Extraction for Anomaly Intrusion Detection”]]. In: Swarm Intelligence in Data Mining, pp. 101-123Springer.
 [[Hauert, Ch., Traulsen, A., Brandt, H., Nowak, M. A. & Sigmund, K. (2007) "Via freedom to coercion: the emergence of costly punishment"]], Science 316, 1905-1907.
@@ Line 65: / Line 58: @@
 [[L.M. Rocha and J. Kaur (2007)."Genotype Editing and the Evolution of Regulation and Memory"]]. Proceedings of the 9th European Conference on Artificial Life. Lecture Notes in Artificial Intelligence (LNAI), 4648: 63-73
 [[W. Riof(2008). “Understanding the Emergence of Cellular Organization”]]. Biosemiotics 1:361–377
 [[Varela, Francisco J.; Maturana, Humberto R.; & Uribe, R. (1974). “Autopoiesis: the organization of living systems, its characterization and a model”]]. Biosystems.5 187–196.
@@ Line 141: / Line 129: @@
+}
 </bibtex>

← Older revision		Revision as of 23:40, 27 March 2009
Line 14:		Line 14:

	[[Kauffman, S. (1984). “Emergent Properties In Random Complex Automata”]]. Physica D. 10:145-156.		[[Kauffman, S. (1984). “Emergent Properties In Random Complex Automata”]]. Physica D. 10:145-156.
		+
		+	[[Kauffman, S. (1986). "Adaptive Automata Based on Darwinian Selection"]]

	[[Gershenson, C. (2004). “Introduction to Random Boolean Networks”]]. In Bedau, M., P. Husbands, T. Hutton, S. Kumar, and H. Suzuki (eds.) Workshop and Tutorial Proceedings, Ninth International Conference on the Simulation and Synthesis of Living Systems (ALifeIX). pp. 160-173.		[[Gershenson, C. (2004). “Introduction to Random Boolean Networks”]]. In Bedau, M., P. Husbands, T. Hutton, S. Kumar, and H. Suzuki (eds.) Workshop and Tutorial Proceedings, Ninth International Conference on the Simulation and Synthesis of Living Systems (ALifeIX). pp. 160-173.

← Older revision		Revision as of 23:36, 27 March 2009
Line 77:		Line 77:
	[[Varela, F.J. (1997). "Patterns of Life: Intertwining Identity and Cognition"]]. Brain and Cognition, 34(1):72-87.		[[Varela, F.J. (1997). "Patterns of Life: Intertwining Identity and Cognition"]]. Brain and Cognition, 34(1):72-87.

		+	[[Evolutionary Phenomena in Simple Dynamics Lindgren 1991]]

	[[faure2006dag \| review]] <bibtex>@article{faure2006dag,		[[faure2006dag \| review]] <bibtex>@article{faure2006dag,

@@ Line 78: / Line 78: @@
-<bibtex>@article{faure2006dag,
+[[faure2006dag | review]] <bibtex>@article{faure2006dag,
    title={{Dynamical analysis of a generic Boolean model for the control of the mammalian cell cycle}},
    author={Faure, A. and Naldi, A. and Chaouiya, C. and Thieffry, D.},
@@ Line 87: / Line 87: @@
    publisher={Oxford Univ Press}
+}
-</bibtex> [[faure2006dag | review]]
+</bibtex>
-<bibtex>
+[[kashtan2005sem|review]] <bibtex>
 @article{kashtan2005sem,
    title={{Spontaneous evolution of modularity and network motifs}},
@@ Line 99: / Line 99: @@
    publisher={National Acad Sciences}
+}
-</bibtex> [[kashtan2005sem|review]]
+</bibtex>
-<bibtex>
+[[ramos2004ess|review]] <bibtex>
 @article{ramos2004ess,
    title={{Evolving a stigmergic self-organized data-mining}},
@@ Line 107: / Line 107: @@
    year={2004}
+}
-</bibtex> [[ramos2004ess|review]]
+</bibtex>
-<bibtex>
+[[dellaert1994tem|review]] <bibtex>
 @conference{dellaert1994tem,
    title={{Toward an evolvable model of development for autonomous agent synthesis}},
@@ Line 115: / Line 115: @@
    year={1994}
+}
-</bibtex>[[dellaert1994tem|review]]
+</bibtex>
-<bibtex>
+[[yaeger 1994 cgp|review]] <bibtex>
 @conference{yaeger1994cgp,
    title={{Computational genetics, physiology, metabolism, neural systems, learning, vision, and behavior or Poly World: Life in a new context}},
@@ Line 126: / Line 126: @@
    organization={ADDISON-WESLEY PUBLISHING CO}
+}
-</bibtex> [[yaeger 1994 cgp|review]]
+</bibtex>
 [[Synthetic neuroethology Pete Mandik 2002]]
-<bibtex>
+[[ray 1992 eea|review]] <bibtex>
 @article{ray1992eea,
    title={{Evolution, ecology and optimization of digital organisms}},
@@ Line 137: / Line 137: @@
    year={1992}
+}
-</bibtex> [[ray 1992 eea|review]]
+</bibtex>

@@ Line 130: / Line 130: @@
 [[Synthetic neuroethology Pete Mandik 2002]]
-</bibtex>
+<bibtex>
 @article{ray1992eea,
    title={{Evolution, ecology and optimization of digital organisms}},

← Older revision		Revision as of 22:04, 27 March 2009
Line 127:		Line 127:
	}		}
	</bibtex>		</bibtex>
		+
		+	[[Synthetic neuroethology Pete Mandik 2002]]

← Older revision		Revision as of 20:10, 27 March 2009
Line 69:		Line 69:

	[[W. Riof(2008). “Understanding the Emergence of Cellular Organization”]]. Biosemiotics 1:361–377		[[W. Riof(2008). “Understanding the Emergence of Cellular Organization”]]. Biosemiotics 1:361–377
		+
		+
		+	[[Varela, Francisco J.; Maturana, Humberto R.; & Uribe, R. (1974). “Autopoiesis: the organization of living systems, its characterization and a model”]]. Biosystems.5 187–196.
		+
		+	[[Varela, F.J. (1996). "The early days of autopoiesis"]]. Systems Research, 13(3):407-416.
		+
		+	[[Varela, F.J. (1997). "Patterns of Life: Intertwining Identity and Cognition"]]. Brain and Cognition, 34(1):72-87.
		+

	[[faure2006dag \| review]]<bibtex>@article{faure2006dag,		[[faure2006dag \| review]]<bibtex>@article{faure2006dag,